Transcript: lnc-RPL11-1:5

Basic information

LNCipedia transcript ID: lnc-RPL11-1:5 
LNCipedia gene ID: lnc-RPL11-1
Ensembl Gene ID: ENSG00000197880
Ensembl Transcript ID: ENST00000477916
Location (hg38): chr1:23581495-23640568
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1781 bp
Exons: 7
Sources: NONCODE v4; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT001534; ENST00000477916.5
Alternative gene names: ENSG00000197880.8; MDS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.1536 non-coding 
CPAT coding probability 3.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPL11-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPL11-1:2
4.0 lnc-MDS2-1:3
4.1 lnc-MDS2-1:3
5.0 lnc-MDS2-1:3
5.1 lnc-ELOA-9:1
5.2 lnc-RPL11-1:5