Transcript: lnc-RPL13-5:1

Basic information

LNCipedia transcript ID: lnc-RPL13-5:1 
LNCipedia gene ID: lnc-RPL13-5
Location (hg38): chr16:89516797-89522217
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5421 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000611189.1
Alternative gene names: ENSG00000274627.1; RP11-104N10.2; AC092123.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 21.8269 non-coding 
CPAT coding probability 9.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPL13-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RPL13-5:1
4.1 lnc-RPL13-5:1
5.0 lnc-RPL13-5:1
5.1 lnc-MAP1LC3B-35:1
5.2 lnc-RPL13-5:1