Transcript: lnc-RPL36AL-2:1

Basic information

LNCipedia transcript ID: lnc-RPL36AL-2:1 
LNCipedia gene ID: lnc-RPL36AL-2
Ensembl Gene ID: ENSG00000258450
Ensembl Transcript ID: ENST00000556657
Location (hg38): chr14:49629291-49629890
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 401 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556657.1; RP11-649E7.7-001; OTTHUMT00000414197.1; NONHSAT036723
Alternative gene names: ENSG00000258450.1; RP11-649E7.7; OTTHUMG00000171560.1; AL139099.3; AL139099.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.5643 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPL36AL-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPL36AL-2:1
4.0 lnc-RPL36AL-2:1
4.1 lnc-RPL36AL-2:1
5.0 lnc-RPL36AL-2:1
5.1 lnc-RTN1-130:1
5.2 lnc-RPL36AL-2:1