Transcript: lnc-RPLP1-12:45

Basic information

LNCipedia transcript ID: lnc-RPLP1-12:45 
LNCipedia gene ID: lnc-RPLP1-12
Location (hg38): chr15:69670130-69695748
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000558941.1; RP11-279F6.3-003; OTTHUMT00000416824.1; NONHSAT046976; ENST00000558941.5
Alternative gene names: ENSG00000259641.1; RP11-279F6.3; OTTHUMG00000172099.1; ENSG00000259641.5; PCAT29;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.0608 non-coding 
CPAT coding probability 19.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPLP1-12:45 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open
  2. Sakurai (2015), The lncRNA DRAIC/PCAT29 Locus Constitutes a Tumor-Suppressive Nexus., Mol. Cancer Res.
  3. Malik (2014), The lncRNA PCAT29 inhibits oncogenic phenotypes in prostate cancer., Mol. Cancer Res.
  4. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPLP1-2:4
4.0 PCAT29:6
4.1 PCAT29:6
5.0 PCAT29:6
5.1 lnc-NOX5-12:45
5.2 lnc-RPLP1-12:45