Transcript: lnc-RPP30-1:1

Basic information

LNCipedia transcript ID: lnc-RPP30-1:1 
LNCipedia gene ID: lnc-RPP30-1
Location (hg38): chr10:90858370-90861664
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 264 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018282; NONHSAT015602
Alternative gene names: XLOC_008558; linc-RPP30-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.2363 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPP30-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPP30-1:1
3.1 lnc-RPP30-1:1
4.0 lnc-RPP30-1:1
4.1 lnc-RPP30-1:1
5.0 lnc-RPP30-1:1
5.1 lnc-SMC3-270:2
5.2 lnc-RPP30-1:1