Transcript: lnc-RPP30-2:1

Basic information

LNCipedia transcript ID: lnc-RPP30-2:1 
LNCipedia gene ID: lnc-RPP30-2
Location (hg38): chr10:90981878-90990693
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3779 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018783; NONHSAT015614
Alternative gene names: XLOC_008559; linc-PCGF5-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.394 non-coding 
CPAT coding probability 2.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPP30-2:1 no no no no

Available literature

  1. Lee (2014), Long noncoding RNAs as putative biomarkers for prostate cancer detection., J Mol Diagn


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPP30-2:1
3.1 lnc-RPP30-2:1
4.0 lnc-RPP30-2:1
4.1 lnc-RPP30-2:1
5.0 lnc-RPP30-2:1
5.1 lnc-SMC3-268:5
5.2 lnc-RPP30-2:1