Transcript: lnc-RPP30-5:1

Basic information

LNCipedia transcript ID: lnc-RPP30-5:1 
LNCipedia gene ID: lnc-RPP30-5
Ensembl Gene ID: ENSG00000238291
Ensembl Transcript ID: ENST00000425365
Location (hg38): chr10:90462717-90467952
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 831 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017856; ENST00000425365; ENST00000425365.1; RP11-94M14.3-001; OTTHUMT00000049341.1; NONHSAT015596
Alternative gene names: XLOC_008557; linc-RPP30-3; ENSG00000238291; RP11-94M14.3; ENSG00000238291.1; OTTHUMG00000018730.1; AL391704.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.9172 non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPP30-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPP30-4:1
3.1 lnc-RPP30-5:1
4.0 lnc-RPP30-5:1
4.1 lnc-RPP30-5:1
5.0 lnc-RPP30-5:1
5.1 lnc-SMC3-271:1
5.2 lnc-RPP30-5:1