Transcript: lnc-RPP30-6:3

Basic information

LNCipedia transcript ID: lnc-RPP30-6:3 
LNCipedia gene ID: lnc-RPP30-6
Ensembl Gene ID: ENSG00000224750
Ensembl Transcript ID: ENST00000453889
Location (hg38): chr10:90454680-90461501
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 874 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017853; ENST00000453889; ENST00000453889.1; RP11-94M14.2-003; OTTHUMT00000049339.1; NONHSAT015593
Alternative gene names: XLOC_008556; linc-RPP30-2; ENSG00000224750; RP11-94M14.2; ENSG00000224750.1; OTTHUMG00000018729.1; ENSG00000224750.2; ENSG00000224750.6; AL391704.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.5637 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPP30-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPP30-5:3
3.1 lnc-RPP30-6:3
4.0 lnc-RPP30-6:3
4.1 lnc-RPP30-6:3
5.0 lnc-RPP30-6:3
5.1 lnc-SMC3-272:3
5.2 lnc-RPP30-6:3