Transcript: lnc-RPP30-6:4

Basic information

LNCipedia transcript ID: lnc-RPP30-6:4 
LNCipedia gene ID: lnc-RPP30-6
Location (hg38): chr10:90454698-90531116
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 784 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017855; ENST00000439157; ENST00000439157.1; RP11-94M14.2-002; OTTHUMT00000049338.1; NONHSAT015594
Alternative gene names: XLOC_008556; linc-RPP30-2; ENSG00000224750; RP11-94M14.2; ENSG00000224750.1; OTTHUMG00000018729.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.3196 non-coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPP30-6:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPP30-5:5
3.1 lnc-RPP30-6:4
4.0 lnc-RPP30-6:4
4.1 lnc-RPP30-6:4
5.0 lnc-RPP30-6:4
5.1 lnc-SMC3-272:5
5.2 lnc-RPP30-6:4