Transcript: lnc-RPP30-6:5

Basic information

LNCipedia transcript ID: lnc-RPP30-6:5 
LNCipedia gene ID: lnc-RPP30-6
Ensembl Gene ID: ENSG00000224750
Ensembl Transcript ID: ENST00000414903
Location (hg38): chr10:90454698-90502968
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 462 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017854; ENST00000414903; ENST00000414903.1; RP11-94M14.2-004; OTTHUMT00000049340.1; NONHSAT015595
Alternative gene names: XLOC_008556; linc-RPP30-2; ENSG00000224750; RP11-94M14.2; ENSG00000224750.1; OTTHUMG00000018729.1; ENSG00000224750.2; ENSG00000224750.6; AL391704.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.5637 non-coding 
CPAT coding probability 5.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPP30-6:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPP30-5:4
3.1 lnc-RPP30-6:5
4.0 lnc-RPP30-6:5
4.1 lnc-RPP30-6:5
5.0 lnc-RPP30-6:5
5.1 lnc-SMC3-272:4
5.2 lnc-RPP30-6:5