Transcript: lnc-RPP38-6:1

Basic information

LNCipedia transcript ID: lnc-RPP38-6:1 
LNCipedia gene ID: lnc-RPP38-6
Location (hg38): chr10:15737743-15738661
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 919 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000107089.1|FTMT24000001081.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -130.2209 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPP38-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RPP38-6:1
5.0 lnc-RPP38-6:1
5.1 lnc-NPY4R2-341:1
5.2 lnc-RPP38-6:1