Transcript: lnc-RPP40-1:2

Basic information

LNCipedia transcript ID: lnc-RPP40-1:2 
LNCipedia gene ID: lnc-RPP40-1
Ensembl Gene ID: ENSG00000271978
Ensembl Transcript ID: ENST00000606227
Location (hg38): chr6:5031756-5054423
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3273 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512710; TCONS_00011439; NONHSAT107505; ENST00000606227.1
Alternative gene names: ENSG00000248284; XLOC_005592; linc-RPP40; ENSG00000271978.1; RP11-428J1.4; AL359643.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.4824 non-coding 
CPAT coding probability 1.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPP40-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPP40-1:2
3.1 lnc-RPP40-1:2
4.0 lnc-RPP40-1:2
4.1 lnc-RPP40-1:2
5.0 lnc-RPP40-1:2
5.1 lnc-ECI2-70:6
5.2 lnc-RPP40-1:2