Transcript: lnc-RPP40-3:1

Basic information

LNCipedia transcript ID: lnc-RPP40-3:1 
LNCipedia gene ID: lnc-RPP40-3
Ensembl Gene ID: ENSG00000260673
Ensembl Transcript ID: ENST00000568110
Location (hg38): chr6:4599287-4602420
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 573 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568110.1; RP4-529N6.2-001; OTTHUMT00000431243.1; NONHSAT107455
Alternative gene names: ENSG00000260673.1; RP4-529N6.2; OTTHUMG00000175892.1; AL034376.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.5254 non-coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPP40-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPP40-3:1
4.0 lnc-RPP40-3:1
4.1 lnc-RPP40-3:1
5.0 lnc-RPP40-3:1
5.1 lnc-ECI2-34:1
5.2 lnc-RPP40-3:1