Transcript: lnc-RPRM-2:1

Basic information

LNCipedia transcript ID: lnc-RPRM-2:1 
LNCipedia gene ID: lnc-RPRM-2
Ensembl Gene ID: ENSG00000224612
Ensembl Transcript ID: ENST00000413043
Location (hg38): chr2:153171987-153201726
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 383 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003422; ENST00000413043; ENST00000413043.1; AC011901.2-001; OTTHUMT00000332582.1; NONHSAT074996
Alternative gene names: XLOC_002358; linc-PRPF40A; ENSG00000224612; AC011901.2; ENSG00000224612.1; OTTHUMG00000153822.1; AC079150.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.1268 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPRM-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPRM-1:1
3.1 lnc-RPRM-2:1
4.0 lnc-RPRM-2:1
4.1 lnc-RPRM-2:1
5.0 lnc-RPRM-2:1
5.1 lnc-MMADHC-47:1
5.2 lnc-RPRM-2:1