Transcript: lnc-RPRML-3:11

Basic information

LNCipedia transcript ID: lnc-RPRML-3:11 
LNCipedia gene ID: lnc-RPRML-3
Ensembl Gene ID: ENSG00000262879
Ensembl Transcript ID: ENST00000571143
Location (hg38): chr17:47010464-47021666
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 358 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000571143.1; RP11-156P1.3-010; OTTHUMT00000440923.1; NONHSAT054242
Alternative gene names: ENSG00000262879.1; RP11-156P1.3; OTTHUMG00000178188.1; ENSG00000262879.5; AC068152.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.8116 non-coding 
CPAT coding probability 5.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPRML-3:11 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPRML-3:11
4.0 lnc-RPRML-3:11
4.1 lnc-RPRML-3:11
5.0 lnc-RPRML-3:11
5.1 lnc-GFAP-56:26
5.2 lnc-RPRML-3:11