Transcript: lnc-RPRML-3:6

Basic information

LNCipedia transcript ID: lnc-RPRML-3:6 
LNCipedia gene ID: lnc-RPRML-3
Ensembl Gene ID: ENSG00000262879
Ensembl Transcript ID: ENST00000576938
Location (hg38): chr17:47071474-47099941
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 372 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000576938.1; RP11-156P1.3-004; OTTHUMT00000440928.1; NONHSAT054276
Alternative gene names: ENSG00000262879.1; RP11-156P1.3; OTTHUMG00000178188.1; ENSG00000262879.5; AC068152.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.7578 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPRML-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPRML-3:6
4.0 lnc-RPRML-3:6
4.1 lnc-RPRML-3:6
5.0 lnc-RPRML-3:6
5.1 lnc-GFAP-56:12
5.2 lnc-RPRML-3:6