Transcript: lnc-RPS21-2:6

Basic information

LNCipedia transcript ID: lnc-RPS21-2:6 
LNCipedia gene ID: lnc-RPS21-2
Ensembl Gene ID: ENSG00000233017
Ensembl Transcript ID: ENST00000618678
Location (hg38): chr20:62429121-62447621
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 420 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000618678.1
Alternative gene names: ENSG00000233017.2; RP5-908M14.5; AL121832.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.2637 non-coding 
CPAT coding probability 4.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS21-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RPS21-2:6
4.1 lnc-RPS21-2:6
5.0 lnc-RPS21-2:6
5.1 lnc-GNAS-39:5
5.2 lnc-RPS21-2:6