Transcript: lnc-RPS24-2:3

Basic information

LNCipedia transcript ID: lnc-RPS24-2:3 
LNCipedia gene ID: lnc-RPS24-2
Ensembl Gene ID: ENSG00000228748
Ensembl Transcript ID: ENST00000600739
Location (hg38): chr10:77783166-77783881
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 716 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT014996; ENST00000600739.1
Alternative gene names: ENSG00000228748.2; RP13-39P12.3; AL450306.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.0559 non-coding 
CPAT coding probability 2.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS24-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL391421.1-2:3
4.0 lnc-AL391421.1-2:3
4.1 lnc-AL391421.1-2:3
5.0 lnc-AL391421.1-2:3
5.1 lnc-MTRNR2L5-219:3
5.2 lnc-RPS24-2:3