Transcript: lnc-RPS24-3:27

Basic information

LNCipedia transcript ID: lnc-RPS24-3:27 
LNCipedia gene ID: lnc-RPS24-3
Ensembl Gene ID: ENSG00000230417
Ensembl Transcript ID: ENST00000476909
Location (hg38): chr10:78267410-78280213
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 792 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000476909; ENST00000476909.1; LINC00595-003; OTTHUMT00000048930.1
Alternative gene names: ENSG00000227136; C10orf101; ENSG00000227136.2; LINC00595; OTTHUMG00000018552.2; ENSG00000230417.11; LINC00856


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.733 non-coding 
CPAT coding probability 5.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS24-3:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS24-4:3
3.1 lnc-RPS24-5:3
4.0 lnc-RPS24-3:27
4.1 lnc-RPS24-3:27
5.0 lnc-RPS24-3:27
5.1 lnc-MTRNR2L5-236:34
5.2 lnc-RPS24-3:27