Transcript: lnc-RPS24-3:3

Basic information

LNCipedia transcript ID: lnc-RPS24-3:3 
LNCipedia gene ID: lnc-RPS24-3
Ensembl Gene ID: ENSG00000230417
Ensembl Transcript ID: ENST00000434974
Location (hg38): chr10:78248748-78252645
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2692 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434974; ENST00000434974.1; RP11-90J7.3-001; OTTHUMT00000048934.1
Alternative gene names: ENSG00000230417; RP11-90J7.3; ENSG00000230417.4; OTTHUMG00000018555.2; ENSG00000230417.6; LINC00856; ENSG00000230417.11; LINC00595


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.6024 non-coding 
CPAT coding probability 22.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS24-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZMIZ1-1:3
3.1 lnc-RPS24-3:3
4.0 lnc-RPS24-3:3
4.1 lnc-RPS24-3:3
5.0 lnc-RPS24-3:3
5.1 lnc-MTRNR2L5-236:20
5.2 lnc-RPS24-3:3