Transcript: lnc-RPS25-5:1

Basic information

LNCipedia transcript ID: lnc-RPS25-5:1 
LNCipedia gene ID: lnc-RPS25-5
Ensembl Gene ID: ENSG00000254428
Ensembl Transcript ID: ENST00000531087
Location (hg38): chr11:119003742-119004893
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 523 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531087.1; RP11-110I1.11-001; OTTHUMT00000389663.1; NONHSAT024538
Alternative gene names: ENSG00000254428.1; RP11-110I1.11; OTTHUMG00000166416.1; AP003392.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.1945 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS25-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-110I1.12.1-2:1
4.0 lnc-RP11-110I1.12.1-2:1
4.1 lnc-RP11-110I1.12.1-2:1
5.0 lnc-RP11-110I1.12.1-2:1
5.1 lnc-SLC37A4-3:1
5.2 lnc-RPS25-5:1