Transcript: lnc-RPS27A-1:23

Basic information

LNCipedia transcript ID: lnc-RPS27A-1:23 
LNCipedia gene ID: lnc-RPS27A-1
Ensembl Gene ID: ENSG00000240401
Ensembl Transcript ID: ENST00000629546
Location (hg38): chr2:55314190-55345828
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 658 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000629546.2
Alternative gene names: ENSG00000240401.8; AC012358.8; AC012358.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -113.9296 non-coding 
CPAT coding probability 1.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS27A-1:23 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RPS27A-1:23
4.1 lnc-RPS27A-1:23
5.0 lnc-RPS27A-1:23
5.1 lnc-PAPOLG-69:25
5.2 lnc-RPS27A-1:23