Transcript: lnc-RPS27L-1:1

Basic information

LNCipedia transcript ID: lnc-RPS27L-1:1 
LNCipedia gene ID: lnc-RPS27L-1
Ensembl Gene ID: ENSG00000259627
Ensembl Transcript ID: ENST00000558905
Location (hg38): chr15:63070025-63071911
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 691 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558905.1; RP11-244F12.2-001; OTTHUMT00000417108.1; NONHSAT046594
Alternative gene names: ENSG00000259627.1; RP11-244F12.2; OTTHUMG00000172146.1; AC079328.3; AC079328.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.4382 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS27L-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPS27L-1:1
4.0 lnc-RPS27L-1:1
4.1 lnc-RPS27L-1:1
5.0 lnc-RPS27L-1:1
5.1 lnc-ICE2-66:1
5.2 lnc-RPS27L-1:1