Transcript: lnc-RPS27L-2:5

Basic information

LNCipedia transcript ID: lnc-RPS27L-2:5 
LNCipedia gene ID: lnc-RPS27L-2
Ensembl Gene ID: ENSG00000259756
Ensembl Transcript ID: ENST00000559589
Location (hg38): chr15:62682916-62690448
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 577 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559589.1; RP11-625H11.2-001; OTTHUMT00000416585.1; NONHSAT046569
Alternative gene names: ENSG00000259756.1; RP11-625H11.2; OTTHUMG00000172038.1; AC100839.1; AC100839.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 75.2815 coding 
CPAT coding probability 13.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RPS27L-2:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-625H11.1.1-2:1
4.0 lnc-RP11-625H11.1.1-2:1
4.1 lnc-RP11-625H11.1.1-2:1
5.0 lnc-RP11-625H11.1.1-2:1
5.1 lnc-ICE2-59:1
5.2 lnc-RPS27L-2:5