Transcript: lnc-RPS29-2:1

Basic information

LNCipedia transcript ID: lnc-RPS29-2:1 
LNCipedia gene ID: lnc-RPS29-2
Ensembl Gene ID: ENSG00000258868
Ensembl Transcript ID: ENST00000557062
Location (hg38): chr14:49057713-49077505
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 522 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557062; ENST00000557062.1; RP11-816J8.1-001; OTTHUMT00000410766.1; NONHSAT036708
Alternative gene names: ENSG00000258868; RP11-816J8.1; ENSG00000258868.1; OTTHUMG00000170868.1; AL110505.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.3997 non-coding 
CPAT coding probability 2.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS29-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS29-2:1
3.1 lnc-RPS29-2:1
4.0 lnc-RPS29-2:1
4.1 lnc-RPS29-2:1
5.0 lnc-RPS29-2:1
5.1 lnc-RTN1-136:1
5.2 lnc-RPS29-2:1