Transcript: lnc-RPS4Y1-3:1

Basic information

LNCipedia transcript ID: lnc-RPS4Y1-3:1 
LNCipedia gene ID: lnc-RPS4Y1-3
Location (hg38): chrY:1767347-1768776
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 548 bp
Exons: 2
Sources: Broad Institute; Gencode v13; NONCODE v4
Alternative transcript names: TCONS_00017603; ENSTR0000453953.1; RP13-297E16.5-001; OTTHUMT00000055610.1; NONHSAT139276
Alternative gene names: XLOC_008273; linc-CD99-7; ENSGR0000234622.1; RP13-297E16.5; OTTHUMG00000021064.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 37.2208 non-coding 
CPAT coding probability 19.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS4Y1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS4Y1-2:1
3.1 lnc-RPS4Y1-3:1
4.0 lnc-RPS4Y1-3:1
4.1 lnc-RPS4Y1-3:1
5.0 lnc-RPS4Y1-3:1
5.1 lnc-TGIF2LY-12:1
5.2 lnc-RPS4Y1-3:1