Transcript: lnc-RPS4Y1-6:5

Basic information

LNCipedia transcript ID: lnc-RPS4Y1-6:5 
LNCipedia gene ID: lnc-RPS4Y1-6
RefSeq ID: NR_026710
Location (hg38): chrY:1400531-1413586
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1789 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT139268; NR_026710; NR_026710.1
Alternative gene names: ASMTL-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 51.0441 non-coding 
CPAT coding probability 74.75% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RPS4Y1-6:5 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPS4Y1-6:5
4.0 lnc-RPS4Y1-6:5
4.1 lnc-RPS4Y1-6:5
5.0 lnc-RPS4Y1-6:5
5.1 lnc-TGIF2LY-15:1
5.2 lnc-RPS4Y1-6:5