Transcript: lnc-RPS4Y1-8:2

Basic information

LNCipedia transcript ID: lnc-RPS4Y1-8:2 
LNCipedia gene ID: lnc-RPS4Y1-8
Location (hg38): chrY:320990-321851
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 428 bp
Exons: 2
Sources: Broad Institute; Gencode v13; NONCODE v4
Alternative transcript names: TCONS_00017599; ENSTR0000391707.2; PPP2R3B-AS1-001; OTTHUMT00000055574.1; NONHSAT139261
Alternative gene names: XLOC_008270; linc-SHOX-5; ENSGR0000226179.1; PPP2R3B-AS1; OTTHUMG00000021049.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.8669 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS4Y1-8:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPS4Y1-5:2
3.1 lnc-RPS4Y1-8:2
4.0 lnc-RPS4Y1-8:2
4.1 lnc-RPS4Y1-8:2
5.0 lnc-RPS4Y1-8:2
5.1 lnc-TGIF2LY-22:5
5.2 lnc-RPS4Y1-8:2