Transcript: lnc-RPS6KA3-1:2

Basic information

LNCipedia transcript ID: lnc-RPS6KA3-1:2 
LNCipedia gene ID: lnc-RPS6KA3-1
Ensembl Gene ID: ENSG00000283631
Ensembl Transcript ID: ENST00000636738
Location (hg38): chrX:20311838-20317783
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 632 bp
Exons: 2
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000636738.1
Alternative gene names: ENSG00000283631.1; RP11-1037J10.1; AL928596.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -216.4869 non-coding 
CPAT coding probability 5.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS6KA3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RPS6KA3-1:2
5.0 lnc-RPS6KA3-1:2
5.1 lnc-PCSK1N-144:2
5.2 lnc-RPS6KA3-1:2