Transcript: lnc-RPS6KA4-1:3

Basic information

LNCipedia transcript ID: lnc-RPS6KA4-1:3 
LNCipedia gene ID: lnc-RPS6KA4-1
Location (hg38): chr11:64420390-64421072
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT021995; FPKM1_group_4751_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.9957 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS6KA4-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP003774.4.1-1:5
4.0 lnc-AP003774.4.1-1:5
4.1 lnc-AP003774.4.1-1:5
5.0 lnc-AP003774.4.1-1:5
5.1 lnc-PPP2R5B-35:1
5.2 lnc-RPS6KA4-1:3