Transcript: lnc-RPS6KA4-1:7

Basic information

LNCipedia transcript ID: lnc-RPS6KA4-1:7 
LNCipedia gene ID: lnc-RPS6KA4-1
Location (hg38): chr11:64428161-64432670
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 314 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: TCONS_00019144; ENST00000449694; NONHSAT021998
Alternative gene names: XLOC_009158; linc-SLC22A11-2; ENSG00000231492; AP003774.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.4267 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RPS6KA4-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP003774.4.1-1:1
3.1 lnc-AP003774.4.1-1:4
4.0 lnc-AP003774.4.1-1:4
4.1 lnc-AP003774.4.1-1:4
5.0 lnc-AP003774.4.1-1:4
5.1 lnc-PPP2R5B-35:5
5.2 lnc-RPS6KA4-1:7