Transcript: lnc-RPS6KA4-3:3

Basic information

LNCipedia transcript ID: lnc-RPS6KA4-3:3 
LNCipedia gene ID: lnc-RPS6KA4-3
Ensembl Gene ID: ENSG00000181908
Ensembl Transcript ID: ENST00000316124
Location (hg38): chr11:64449074-64451657
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2340 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000316124.3
Alternative gene names: ENSG00000181908.5; AP003774.4; AP003774.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -21.053 non-coding 
CPAT coding probability 66.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RPS6KA4-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AP003774.4.1-3:2
4.1 lnc-AP003774.4.1-3:2
5.0 lnc-AP003774.4.1-3:2
5.1 lnc-PPP2R5B-34:3
5.2 lnc-RPS6KA4-3:3