Transcript: lnc-RREB1-4:9

Basic information

LNCipedia transcript ID: lnc-RREB1-4:9 
LNCipedia gene ID: lnc-RREB1-4
Location (hg38): chr6:6901022-6918715
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 933 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011260; ENST00000422310; ENST00000422310.1; RP3-429O6.1-001; OTTHUMT00000039767.1; NONHSAT107580
Alternative gene names: XLOC_005152; linc-RREB1-2; ENSG00000223342; RP3-429O6.1; ENSG00000223342.1; OTTHUMG00000014195.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -210.2854 non-coding 
CPAT coding probability 3.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RREB1-4:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RREB1-2:1
3.1 lnc-RREB1-3:1
4.0 lnc-RREB1-3:1
4.1 lnc-RREB1-4:9
5.0 lnc-RREB1-4:9
5.1 lnc-PRPF4B-85:1
5.2 lnc-RREB1-4:9