Transcript: lnc-RRN3-3:5

Basic information

LNCipedia transcript ID: lnc-RRN3-3:5 
LNCipedia gene ID: lnc-RRN3-3
Ensembl Gene ID: ENSG00000270580
Ensembl Transcript ID: ENST00000605794
Location (hg38): chr16:15104723-15131601
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2902 bp
Exons: 18
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000605794.1; ENST00000605794.5
Alternative gene names: ENSG00000270580.1; RP11-1186N24.5; ENSG00000270580.5; PKD1P6; PKD1P6-NPIPP1; AC139256.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 388.0139 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RRN3-3:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RRN3-3:1
4.0 lnc-NPIPP1-3:1
4.1 lnc-NPIPP1-3:1
5.0 lnc-NPIPP1-3:1
5.1 lnc-MARF1-9:1
5.2 lnc-RRN3-3:5