Transcript: lnc-RSPH1-3:2

Basic information

LNCipedia transcript ID: lnc-RSPH1-3:2 
LNCipedia gene ID: lnc-RSPH1-3
Location (hg38): chr21:42648303-42651244
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2822 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00028786
Alternative gene names: XLOC_014093; linc-RSPH1-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.9689 non-coding 
CPAT coding probability 28.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RSPH1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RSPH1-2:1
3.1 lnc-RSPH1-3:2
4.0 lnc-RSPH1-3:2
4.1 lnc-RSPH1-3:2
5.0 lnc-RSPH1-3:2
5.1 lnc-POFUT2-55:1
5.2 lnc-RSPH1-3:2