Transcript: lnc-RSPH1-4:1

Basic information

LNCipedia transcript ID: lnc-RSPH1-4:1 
LNCipedia gene ID: lnc-RSPH1-4
Location (hg38): chr21:42651591-42652613
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 337 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029153; NONHSAT082343
Alternative gene names: XLOC_014094; linc-RSPH1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.3907 non-coding 
CPAT coding probability 7.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RSPH1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RSPH1-3:1
3.1 lnc-RSPH1-4:1
4.0 lnc-RSPH1-4:1
4.1 lnc-RSPH1-4:1
5.0 lnc-RSPH1-4:1
5.1 lnc-POFUT2-54:1
5.2 lnc-RSPH1-4:1