Transcript: lnc-RSPH1-7:2

Basic information

LNCipedia transcript ID: lnc-RSPH1-7:2 
LNCipedia gene ID: lnc-RSPH1-7
Location (hg38): chr21:42521763-42534652
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 12890 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000056943.1|ENCT00000275253.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 74.1399 coding 
CPAT coding probability 4.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RSPH1-7:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RSPH1-7:2
5.0 lnc-RSPH1-7:2
5.1 lnc-POFUT2-59:3
5.2 lnc-RSPH1-7:2