Transcript: lnc-RTCA-1:2

Basic information

LNCipedia transcript ID: lnc-RTCA-1:2 
LNCipedia gene ID: lnc-RTCA-1
Location (hg38): chr1:100253903-100257410
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2875 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_1089_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.0684 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RTCA-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RTCD1-1:2
4.0 lnc-RTCD1-1:2
4.1 lnc-RTCD1-1:2
5.0 lnc-RTCD1-1:2
5.1 lnc-SLC30A7-25:2
5.2 lnc-RTCA-1:2