Transcript: lnc-RTN1-2:1

Basic information

LNCipedia transcript ID: lnc-RTN1-2:1 
LNCipedia gene ID: lnc-RTN1-2
Location (hg38): chr14:59551172-59564490
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 631 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000556996; ENST00000556996.1; RP11-701B16.3-002; OTTHUMT00000411642.1; NONHSAT037187
Alternative gene names: ENSG00000258607; RP11-701B16.3; ENSG00000258607.1; OTTHUMG00000171096.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.5324 non-coding 
CPAT coding probability 39.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RTN1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RTN1-1:1
3.1 lnc-RTN1-2:1
4.0 lnc-RTN1-2:1
4.1 lnc-RTN1-2:1
5.0 lnc-RTN1-2:1
5.1 lnc-RTN1-2:1
5.2 lnc-RTN1-2:1