Transcript: lnc-RTN1-2:2

Basic information

LNCipedia transcript ID: lnc-RTN1-2:2 
LNCipedia gene ID: lnc-RTN1-2
Location (hg38): chr14:59540683-59564454
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 573 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000556936; ENST00000556936.1; RP11-701B16.3-001; OTTHUMT00000411641.1; NONHSAT037186
Alternative gene names: ENSG00000258607; RP11-701B16.3; ENSG00000258607.1; OTTHUMG00000171096.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -211.0093 non-coding 
CPAT coding probability 15.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RTN1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RTN1-1:2
3.1 lnc-RTN1-2:2
4.0 lnc-RTN1-2:2
4.1 lnc-RTN1-2:2
5.0 lnc-RTN1-2:2
5.1 lnc-RTN1-2:2
5.2 lnc-RTN1-2:2