Transcript: lnc-RTN3-2:1

Basic information

LNCipedia transcript ID: lnc-RTN3-2:1 
LNCipedia gene ID: lnc-RTN3-2
Ensembl Gene ID: ENSG00000203520
Ensembl Transcript ID: ENST00000542805
Location (hg38): chr11:63616308-63621671
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 573 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542805.1; RP11-697H9.3-001; OTTHUMT00000396636.1; NONHSAT021884
Alternative gene names: ENSG00000203520.3; RP11-697H9.3; OTTHUMG00000167853.1; AP000753.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.6957 non-coding 
CPAT coding probability 4.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RTN3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RTN3-2:1
4.0 lnc-RTN3-2:1
4.1 lnc-RTN3-2:1
5.0 lnc-RTN3-2:1
5.1 lnc-TMEM179B-19:1
5.2 lnc-RTN3-2:1