Transcript: lnc-RTN4-3:1

Basic information

LNCipedia transcript ID: lnc-RTN4-3:1 
LNCipedia gene ID: lnc-RTN4-3
Ensembl Gene ID: ENSG00000238018
Ensembl Transcript ID: ENST00000456363
Location (hg38): chr2:54661011-54662792
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 602 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456363.1; AC093110.3-001; OTTHUMT00000326312.1; NONHSAT070744
Alternative gene names: ENSG00000238018.1; AC093110.3; OTTHUMG00000152506.1; ENSG00000238018.2; AC093110.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -163.3248 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RTN4-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RTN4-3:1
4.0 lnc-RTN4-3:1
4.1 lnc-RTN4-3:1
5.0 lnc-RTN4-3:1
5.1 lnc-PPP4R3B-25:2
5.2 lnc-RTN4-3:1