Transcript: lnc-RTN4-3:2

Basic information

LNCipedia transcript ID: lnc-RTN4-3:2 
LNCipedia gene ID: lnc-RTN4-3
Ensembl Gene ID: ENSG00000238018
Ensembl Transcript ID: ENST00000626206
Location (hg38): chr2:54661051-54680045
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 854 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000626206.1
Alternative gene names: ENSG00000238018.2; AC093110.3; AC093110.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.1766 non-coding 
CPAT coding probability 3.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RTN4-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RTN4-3:2
4.1 lnc-RTN4-3:2
5.0 lnc-RTN4-3:2
5.1 lnc-PPP4R3B-25:1
5.2 lnc-RTN4-3:2