Transcript: lnc-RTN4IP1-2:28

Basic information

LNCipedia transcript ID: lnc-RTN4IP1-2:28 
LNCipedia gene ID: lnc-RTN4IP1-2
Location (hg38): chr6:106184476-106202429
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2659 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT114230
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 562.0683 coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RTN4IP1-2:28 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATG5-2:3
4.0 lnc-ATG5-2:3
4.1 lnc-ATG5-2:3
5.0 lnc-ATG5-2:3
5.1 lnc-SNX3-26:1
5.2 lnc-RTN4IP1-2:28