Transcript: lnc-RTP4-5:2

Basic information

LNCipedia transcript ID: lnc-RTP4-5:2 
LNCipedia gene ID: lnc-RTP4-5
Ensembl Gene ID: ENSG00000228804
Ensembl Transcript ID: ENST00000437407
RefSeq ID: NR_034062
Location (hg38): chr3:187702366-187732415
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 338 bp
Exons: 3
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_034062; ENST00000437407.1; NR_034062.1
Alternative gene names: ENSG00000228804.5; RP11-211G3.3; AC072022.2; LOC100131635; AC072022.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -269.2524 non-coding 
CPAT coding probability 16.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RTP4-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RTP4-5:1
4.0 lnc-RP11-211G3.3.1-5:2
4.1 lnc-RP11-211G3.3.1-5:2
5.0 lnc-RP11-211G3.3.1-5:2
5.1 lnc-FAM131A-51:2
5.2 lnc-RTP4-5:2