Transcript: lnc-RTP4-6:3

Basic information

LNCipedia transcript ID: lnc-RTP4-6:3 
LNCipedia gene ID: lnc-RTP4-6
Location (hg38): chr3:187743686-187745420
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 536 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000450760; ENST00000450760.1; RP11-211G3.2-001; OTTHUMT00000344201.1; NONHSAT093893
Alternative gene names: ENSG00000223401; RP11-211G3.2; ENSG00000223401.1; OTTHUMG00000156440.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 71.38% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-RTP4-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-211G3.3.1-1:1
3.1 lnc-RP11-211G3.3.1-1:1
4.0 lnc-RP11-211G3.3.1-1:1
4.1 lnc-RP11-211G3.3.1-1:1
5.0 lnc-RP11-211G3.3.1-1:1
5.1 lnc-FAM131A-52:3
5.2 lnc-RTP4-6:3