Transcript: lnc-RTP5-1:4

Basic information

LNCipedia transcript ID: lnc-RTP5-1:4 
LNCipedia gene ID: lnc-RTP5-1
Ensembl Gene ID: ENSG00000235151
Ensembl Transcript ID: ENST00000442867
Location (hg38): chr2:241844380-241845036
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003136; ENST00000442867.1; AC114730.2-001; OTTHUMT00000322463.1; NONHSAT077996
Alternative gene names: XLOC_001922; linc-C2orf85; ENSG00000235151.1; AC114730.2; OTTHUMG00000151392.1; AC131097.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.3704 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RTP5-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXXC11-1:1
3.1 lnc-CXXC11-1:1
4.0 lnc-CXXC11-1:1
4.1 lnc-CXXC11-1:1
5.0 lnc-CXXC11-1:1
5.1 lnc-RTP5-1:2
5.2 lnc-RTP5-1:4