Transcript: lnc-RTP5-8:20

Basic information

LNCipedia transcript ID: lnc-RTP5-8:20 
LNCipedia gene ID: lnc-RTP5-8
Location (hg38): chr2:242160483-242162157
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1321 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003525; NONHSAT078044
Alternative gene names: XLOC_002561; linc-PDCD1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.8335 non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RTP5-8:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC131097.4.1-4:2
3.1 lnc-AC131097.4.1-5:2
4.0 lnc-AC131097.4.1-5:2
4.1 lnc-AC131097.4.1-5:2
5.0 lnc-AC131097.4.1-5:2
5.1 lnc-RTP5-8:12
5.2 lnc-RTP5-8:20