Transcript: lnc-RTTN-8:1

Basic information

LNCipedia transcript ID: lnc-RTTN-8:1 
LNCipedia gene ID: lnc-RTTN-8
Ensembl Gene ID: ENSG00000263417
Ensembl Transcript ID: ENST00000582578
Location (hg38): chr18:70630534-70650744
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 470 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582578.2
Alternative gene names: ENSG00000263417.4; GTSCR1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -157.2046 non-coding 
CPAT coding probability 15.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RTTN-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 GTSCR1:1
4.1 GTSCR1:1
5.0 GTSCR1:1
5.1 lnc-PQLC1-80:1
5.2 lnc-RTTN-8:1