Transcript: lnc-RUBCN-2:9

Basic information

LNCipedia transcript ID: lnc-RUBCN-2:9 
LNCipedia gene ID: lnc-RUBCN-2
Location (hg38): chr3:197636355-197637430
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 487 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006770; NONHSAT094429
Alternative gene names: XLOC_003405; linc-BDH1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.6542 non-coding 
CPAT coding probability 3.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RUBCN-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA0226-3:3
3.1 lnc-KIAA0226-3:3
4.0 lnc-KIAA0226-2:9
4.1 lnc-KIAA0226-2:9
5.0 lnc-KIAA0226-2:9
5.1 lnc-IQCG-22:9
5.2 lnc-RUBCN-2:9